{"id":2323,"date":"2018-11-09T10:39:07","date_gmt":"2018-11-09T10:39:07","guid":{"rendered":"https:\/\/research.reading.ac.uk\/act\/?post_type=kbe_knowledgebase&p=2323"},"modified":"2026-02-06T14:51:20","modified_gmt":"2026-02-06T14:51:20","slug":"act-software-list","status":"publish","type":"kbe_knowledgebase","link":"https:\/\/research.reading.ac.uk\/act\/knowledgebase\/act-software-list\/","title":{"rendered":"ACT software list"},"content":{"rendered":"

Overview of Installed Software<\/h2>\n

This page contains information about the software that is available on the academic computing cluster, the met-cluster and the NX nodes. The lists are not exhaustive as we restricted them to software that isn’t available by default in Centos 7 Linux and focus here on scientific software and programming tools.<\/p>\n

 <\/p>\n

Reading Academic Computing Cluster (RACC)<\/span><\/strong><\/h2>\n

On the RACC software is both installed in default system paths from software package managers (rpms) and as environmental modules, which have to be loaded first.<\/p>\n

Software installed from rpms<\/strong><\/h3>\n

The default versions of these software packages are already in the path and the ‘module load’ command is not needed.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Package<\/strong><\/td>\nDescription<\/strong><\/td>\nCommands<\/strong><\/td>\n<\/tr>\n
R<\/td>\nLanguage for statistical computing and graphics,
\nhttps:\/\/www.r-project.org<\/a><\/td>\n		R<\/td>\n<\/tr>\n
rstudio<\/td>\nGUI environment for R,
\nhttps:\/\/www.rstudio.com\/<\/a><\/td>\n		rstudio<\/td>\n<\/tr>\n
octave<\/td>\nNumerical programming suite compatible with Matlab,
\nhttps:\/\/www.gnu.org\/software\/octave\/<\/a><\/td>\n		octave<\/td>\n<\/tr>\n
gcc<\/td>\nGNU Compiler Collection,
\nhttps:\/\/www.gnu.org\/software\/gcc\/<\/a><\/td>\n		gcc, g++, gfortran<\/td>\n<\/tr>\n
git<\/td>\nVersion control system,
\nhttps:\/\/git-scm.com<\/a><\/td>\n		git<\/td>\n<\/tr>\n
GSL<\/td>\nGNU Scientific Library,
\nhttps:\/\/www.gnu.org\/software\/gsl\/<\/a><\/td>\n		<\/td>\n<\/tr>\n
boost<\/td>\nPeer-reviewed portable C++ source libraries,
\nhttps:\/\/www.boost.org<\/a><\/td>\n		<\/td>\n<\/tr>\n
lapack<\/td>\nLinear Algebra Package,
\nhttp:\/\/www.netlib.org\/lapack\/<\/a><\/td>\n		<\/td>\n<\/tr>\n
blas<\/td>\nBasic Linear Algebra Subprograms,
\nhttp:\/\/www.netlib.org\/blas\/<\/a><\/td>\n		<\/td>\n<\/tr>\n
gdal<\/td>\nGeospatial Data Abstraction Library,
\nhttps:\/\/www.gdal.org<\/a><\/td>\n		<\/td>\n<\/tr>\n
zlib<\/td>\nA Massively Spiffy Yet Delicately Unobtrusive Compression Library,
\nhttps:\/\/zlib.net<\/a><\/td>\n		<\/td>\n<\/tr>\n
grib-api<\/td>\nECMWF\u00a0application program interface accessible for encoding and decoding data in grib format,
\nhttps:\/\/confluence.ecmwf.int\/display\/GRIB\/Home<\/a><\/td>\n		e.g. grib_ls, grib_info, grib_get<\/td>\n<\/tr>\n
curl<\/td>\nCommand-line tool and library for transferring data,
\nhttps:\/\/curl.haxx.se<\/a><\/td>\n		curl<\/td>\n<\/tr>\n
fftw<\/td>\nC subroutine library for computing the discrete Fourier transform (DFT),
\nhttp:\/\/www.fftw.org<\/a><\/td>\n		<\/td>\n<\/tr>\n
udunits<\/td>\nC library for units of physical quantities and a unit-definition and value-conversion utility,
\nhttps:\/\/www.unidata.ucar.edu\/software\/udunits\/<\/a><\/td>\n		udunits<\/td>\n<\/tr>\n
expat<\/td>\nA stream-oriented parser,
\nhttps:\/\/libexpat.github.io<\/a><\/td>\n		<\/td>\n<\/tr>\n
proj<\/td>\nA generic coordinate transformation software,
\nhttps:\/\/proj4.org<\/a><\/td>\n		proj<\/td>\n<\/tr>\n
ncl<\/td>\nNCAR Command Language,
\nhttps:\/\/www.ncl.ucar.edu<\/a><\/td>\n		ncl<\/td>\n<\/tr>\n
nco<\/td>\nnetCDF Operators’
\nhttp:\/\/nco.sourceforge.net<\/a><\/td>\n		e.g. ncks, ncecat, ncwa<\/td>\n<\/tr>\n
ncview<\/td>\nnetCDF visual browser,
\nhttp:\/\/meteora.ucsd.edu\/~pierce\/ncview_home_page.html<\/a><\/td>\n		ncview<\/td>\n<\/tr>\n
cdo<\/td>\nClimate Data Operators,
\nhttps:\/\/code.mpimet.mpg.de\/projects\/cdo<\/a><\/td>\n		cdo<\/td>\n<\/tr>\n
mplayer<\/td>\nMovie Player,
\nhttp:\/\/www.mplayerhq.hu\/design7\/news.html<\/a><\/td>\n		mplayer<\/td>\n<\/tr>\n
cmake<\/td>\nTools to build, test and package software,
\nhttps:\/\/cmake.org<\/a><\/td>\n		cmake<\/td>\n<\/tr>\n
rsync<\/td>\nFile transfer utility,
\nhttps:\/\/rsync.samba.org<\/a><\/td>\n		rsync<\/td>\n<\/tr>\n
rclone<\/td>\nA command line program to sync files and directories to and from cloud storage including OneDrive,
\nhttps:\/\/rclone.org<\/a><\/td>\n		\u00a0rclone<\/td>\n<\/tr>\n
firefox<\/td>\nWeb browser,
\nhttps:\/\/www.mozilla.org\/en-GB\/firefox\/<\/a><\/td>\n		firefox<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

<\/h3>\n

 <\/p>\n

Software available using environmental modules<\/strong><\/h3>\n

If you’re not familiar with the ‘module’ commands, please see Accessing Software on the Cluster<\/a> for information about using environmental modules.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Package<\/strong><\/td>\nDescription<\/strong><\/td>\nCommands<\/strong><\/td>\n<\/tr>\n
ENVI (licensed for v. 5.5 and onward)<\/td>\nImage analysis software
\nhttps:\/\/www.harrisgeospatial.com\/Software-Technology\/ENVI<\/a><\/td>\n		envi<\/td>\n<\/tr>\n
IDL<\/td>\nScientific programming language,
\nhttps:\/\/www.harrisgeospatial.com\/Software-Technology\/IDL<\/a><\/td>\n		idl<\/td>\n<\/tr>\n
Matlab<\/td>\nNumerical computing software and programming language, see also: Running Matlab Scripts as Batch Jobs<\/a>
\nhttps:\/\/uk.mathworks.com\/products\/matlab.html<\/a><\/td>\n		matlab<\/td>\n<\/tr>\n
Canopy python (2.7 and 3.5)<\/td>\nEnthought python distribution\u00a0and analysis environment for scientific and analytic computing, see also: Python on the Cluster<\/a>
\nhttps:\/\/www.enthought.com\/product\/canopy\/<\/a><\/td>\n		python<\/td>\n<\/tr>\n
Anaconda Python (2.7 and 3.5)<\/td>\nAnaconda python distribution\u00a0and analysis environment for scientific and analytic computing, see also: Python on the Cluster<\/a>
\nhttps:\/\/www.anaconda.com<\/a><\/td>\n		python<\/td>\n<\/tr>\n
cuda<\/td>\nNVIDIA parallel computing platform and programming model,
\nhttps:\/\/developer.nvidia.com\/cuda-zone<\/a><\/td>\n		nvcc<\/td>\n<\/tr>\n
gcc<\/td>\nGNU Compiler Collection,
\nhttps:\/\/www.gnu.org\/software\/gcc\/<\/a><\/td>\n		gcc, g++, gfortran<\/td>\n<\/tr>\n
intel<\/td>\nIntel Parallel Studio XE for Fortran,
\nhttps:\/\/software.intel.com\/en-us\/parallel-studio-xe<\/a><\/td>\n		ifort<\/td>\n<\/tr>\n
pgi<\/td>\nPGI Fortran compiler and tools,
\nhttps:\/\/www.pgroup.com<\/a><\/td>\n		e.g. pgf90, pgcc, pgunzip<\/td>\n<\/tr>\n
solstudio<\/td>\nOracle Developer Studio compilers and tools,
\nhttps:\/\/www.oracle.com\/technetwork\/server-storage\/developerstudio\/overview\/index.html<\/a><\/td>\n		e.g. cc, CC, f90, f95<\/td>\n<\/tr>\n
mpich<\/td>\nHigh performance implementation of the Message Passing Interface (MPI) standard,
\nhttps:\/\/www.mpich.org<\/a><\/td>\n		e.g. mpicc, mpifort, mpiexec<\/td>\n<\/tr>\n
openmpi<\/td>\nOpen source\u00a0implementation of the Message Passing Interface (MPI) standard,
\nhttps:\/\/www.open-mpi.org<\/a><\/td>\n		e.g. mpicc, mpifort, mpiexec<\/td>\n<\/tr>\n
nag<\/td>\nNAG library, a\u00a0collection of robust, documented, tested and maintained numerical algorithms,
\nhttps:\/\/www.nag.co.uk\/content\/nag-library\u00a0<\/a><\/td>\n		NAG library on RACC<\/a><\/td>\n<\/tr>\n
netCDF<\/td>\nLibraries and tools that support the creation, access and sharing of array-oriented scientific data,
\nhttps:\/\/www.unidata.ucar.edu\/software\/netcdf\/<\/a><\/td>\n		e.g ncdump, ncgen, nccopy<\/td>\n<\/tr>\n
hdf5<\/td>\nTechnology suite for the management of extremely large and complex data collections,
\nhttps:\/\/support.hdfgroup.org\/HDF5\/<\/a><\/td>\n		e.g h5dump, h5diff, h5ls<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n

Met-Cluster<\/span><\/strong><\/h2>\n

The met-cluster is now a legacy service. While it is still available, software on it can be accessed via the ‘module<\/a>‘ command. Some of the software and packages that are listed for the RACC are also available for the met cluster, although these are older versions and are no longer maintained. For up to date software and libraries, please switch to the RACC<\/a>\u00a0as there are no more updates or additions planned to the met-cluster software.<\/p>\n

 <\/p>\n

NX nodes<\/span><\/strong><\/h2>\n

The NX nodes<\/a>\u00a0use the NoMachine NX<\/a> Enterprise software to provide a virtual linux desktop. The software is only installed in default system paths from software package managers (apt).<\/p>\n\n\n\n\n\n\n\n\n\n
Package<\/strong><\/td>\nDescription<\/strong><\/td>\nCommands<\/strong><\/td>\n<\/tr>\n
git<\/td>\nVersion control system,
\nhttps:\/\/git-scm.com<\/a><\/td>\n		git<\/td>\n<\/tr>\n
curl<\/td>\nCommand-line tool and library for transferring data,
\nhttps:\/\/curl.haxx.se<\/a><\/td>\n		curl<\/td>\n<\/tr>\n
ncview<\/td>\nnetCDF visual browser,
\nhttp:\/\/meteora.ucsd.edu\/~pierce\/ncview_home_page.html<\/a><\/td>\n		ncview<\/td>\n<\/tr>\n
rclone<\/td>\nA command line program to sync files and directories to and from cloud storage including OneDrive, see also: Transferring files to OneDrive for Business via rclone<\/a>
\nhttps:\/\/rclone.org<\/a><\/td>\n		\u00a0rclone<\/td>\n<\/tr>\n
rsync<\/td>\nFile transfer utility,
\nhttps:\/\/rsync.samba.org<\/a><\/td>\n		rsync<\/td>\n<\/tr>\n
firefox<\/td>\nWeb browser,
\nhttps:\/\/www.mozilla.org\/en-GB\/firefox\/<\/a><\/td>\n		firefox<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Packages installed for Meteorology<\/h3>\n

Ubuntu\u00a0 repositories:<\/p>\n

cmake,ghostscript,gimp,git,gv,imagemagick,latexdiff,latex2rtf,libreoffice,lynx,pdftk,php,r-base,rcs,subversion,texlive-full,texmaker,w3m,vlc,xfig,xournal<\/p>\n

Other repositories:<\/p>\n

chrome<\/p>\n

Packages installed for Computer Science<\/h3>\n

Ubuntu\u00a0 repositories:<\/p>\n

cmake-qt-gui,eclipse,git-gui,gedit,meld,nano,vim,gcc,clang,dnsutils,strace,doxygen<\/p>\n

Other repositories:<\/p>\n

atom,eclipse,visual_studio_code<\/p>\n

Direct install from archive file<\/p>\n

archi<\/p>\n","protected":false},"excerpt":{"rendered":"

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The lists are not exhaustive as we restricted them to software that isn’t available by default in Centos 7 Linux and focus here on scientific software and programming tools.<\/p>\n","protected":false},"author":361,"featured_media":1717,"template":"","meta":{"_acf_changed":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"__cvm_playback_settings":[],"__cvm_video_id":"","_links_to":"","_links_to_target":""},"kbe_taxonomy":[61,91],"kbe_tags":[62],"class_list":["post-2323","kbe_knowledgebase","type-kbe_knowledgebase","status-publish","has-post-thumbnail","hentry","kbe_taxonomy-academic-cluster-articles","kbe_taxonomy-software","kbe_tags-service_description"],"acf":[],"yoast_head":"\nACT software list - Academic Computing Team<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/research.reading.ac.uk\/act\/knowledgebase\/act-software-list\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"ACT software list - Academic Computing Team\" \/>\n<meta property=\"og:description\" content=\"Overview of Installed Software This page contains information about the software that is available on the academic computing cluster, the met-cluster and the NX nodes. 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