{"id":1629,"date":"2023-01-13T10:58:10","date_gmt":"2023-01-13T10:58:10","guid":{"rendered":"https:\/\/research.reading.ac.uk\/lemontree\/?p=1629"},"modified":"2023-01-13T10:58:10","modified_gmt":"2023-01-13T10:58:10","slug":"a-recent-paper-led-by-realms-dr-keith-bloomfield-discusses-the-environmental-controls-of-light-use-efficiency-of-gpp","status":"publish","type":"post","link":"https:\/\/research.reading.ac.uk\/lemontree\/a-recent-paper-led-by-realms-dr-keith-bloomfield-discusses-the-environmental-controls-of-light-use-efficiency-of-gpp\/","title":{"rendered":"Environmental controls on the LUE of GPP"},"content":{"rendered":"<p>By Dr Keith Bloomfield<\/p>\n<p>A general formula for photosynthesis is enticingly simple: take a green plant, add carbon dioxide, water, a handful of nutrients (dominated by forms of nitrogen and phosphorus) and sunlight.\u00a0 The plant will generate carbohydrates and oxygen thereby sustaining global food webs and the air we breathe.<\/p>\n<p>Of course, the process is not so simple and much remains to be learned about the linked reactions, cycles and feedbacks.\u00a0 But the critical drivers for the reactions can be postulated and should allow us to advance a model that simulates levels of plant productivity.\u00a0 Like most chemical processes, carbon assimilation is influenced by temperature \u2013 so we need to add that to the mix.<\/p>\n<p>Gross primary production (GPP) by terrestrial ecosystems is a key quantity in the global carbon cycle.\u00a0 This is the domain of the land surface model (LSM) that attempts to simulate the coupled fluxes of carbon, water and energy between the land and the atmosphere.\u00a0 The earliest LSMs date from the 1970s and as the models proliferate in number, they also grow in complexity as additional processes are included, but with no consistent trend towards better performance or consensus in design.<\/p>\n<p>Many (perhaps most) LSMs operate by dividing the land surface into vegetation-dependent tiles; these vegetation classes are often referred to as Plant Functional Types (PFT).\u00a0 PFT-specific trait values are then required to drive the global LSM.\u00a0 But there are hundreds of thousands of species of vascular plants and we can never hope to measure all plants, everywhere, in all seasons.\u00a0 Could a single predictive model work for all species in all locations?\u00a0 That is the ultimate ambition of the Productivity model (P-model, Wang et al., 2017) under development within Lab Prentice and much examined on these pages.\u00a0 Ideally, such a model would be based on available theory, rather than reliant on empirical observations, and would be driven by publicly available, remotely sensed data \u2013 removing (or greatly reducing) the need for expensive and laborious field campaigns.<\/p>\n<p>The instantaneous controls of leaf-level photosynthesis are well established, but there is still no consensus on the mechanisms by which canopy-level GPP depends on spatial and temporal variation in the environment. The standard model of photosynthesis (Farquhar et al., 1980) provides a robust mechanistic representation for C<sub>3<\/sub> species, however, additional assumptions are required to \u2018scale up\u2019 from leaf to canopy.\u00a0 As a consequence, competing models make inconsistent predictions about how GPP will respond to continuing environmental change.<\/p>\n<p>This problem is addressed in our recent paper in <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/full\/10.1111\/gcb.16511\" target=\"_blank\" rel=\"noopener\">Global Change Biology.<\/a> This paper by means of an empirical analysis of the light use efficiency (LUE) of GPP inferred from eddy-covariance carbon dioxide flux measurements, <em>in situ<\/em> measurements of photosynthetically active radiation (PAR) and remotely sensed estimates of the fraction of PAR (fAPAR) absorbed by the vegetation canopy. Focusing on LUE allows potential drivers of GPP to be separated from its overriding dependence on light. GPP data from over 100 sites, collated over 20 years and located in a range of biomes and climate zones, were extracted from the FLUXNET2015 database and combined with remotely sensed fAPAR data to estimate daily LUE. \u00a0Daytime air temperature, vapour pressure deficit, diffuse fraction of solar radiation and soil moisture were shown to be salient predictors of LUE.\u00a0 The same model design was fitted to site-based LUE estimates generated by 16 terrestrial ecosystem models forming part of the North American Carbon Program (NACP, Schaefer et al., 2012).<\/p>\n<p>The published models showed wide variation in the shape, the strength and even the sign of the environmental effects on modelled LUE. These findings highlight important model deficiencies and suggest a need to progress beyond simple \u2018goodness of fit\u2019 comparisons of inferred and predicted carbon fluxes towards an approach focused on the functional responses of the underlying dependencies.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1630 aligncenter\" src=\"https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog-300x257.png\" alt=\"\" width=\"361\" height=\"309\" srcset=\"https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog-300x257.png 300w, https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog-1024x878.png 1024w, https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog-768x659.png 768w, https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog-1536x1317.png 1536w, https:\/\/research.reading.ac.uk\/lemontree\/wp-content\/uploads\/sites\/190\/2023\/01\/Keith-blog.png 1880w\" sizes=\"auto, (max-width: 361px) 100vw, 361px\" \/><\/p>\n<h6 style=\"text-align: center\">Figure 1. A common dataset of environmental variables, including temperature and measures of air and soil moisture, produced widely differing effects when applied to productivity predictions generated by an ensemble of terrestrial biosphere models.\u00a0 The published models showed variation in the shape, the strength and even the sign of the environmental effects on modelled light use efficiency (mol C mol<sup>-1<\/sup> photons). \u00a9Keith Bloomfield.<\/h6>\n<p>At present, we do not model the effects of temperature particularly well.\u00a0 This is evident when comparing the functional responses in the figure above: contrast the relationship predicted by the best-fitting empirical model applied to the dataset (in red) and that corresponding to the P-model (in green).\u00a0 The P-model requires far fewer parameters than most current terrestrial models, but it is under continuous development and one challenge now is how to introduce a more realistic temperature response.\u00a0 The process of acclimation, whereby plants\u2019 temperature maxima might be shifted in response to changing conditions, is an important and highly topical consideration.\u00a0 Differential canopy penetration by diffuse and direct radiation, a phenomenon ignored by \u2018big leaf\u2019 models, is another essential line of development.<\/p>\n<p>Concurrent work (not shown here) has highlighted a third area for potential improvements. The P model correctly predicts the observed temperature dependence of the ratio of electron transport capacity (<em>J<\/em><sub>max<\/sub>) to carboxylation capacity (<em>V<\/em><sub>cmax<\/sub>). It also correctly predicts that this ratio increases with enhanced CO<sub>2<\/sub> (eCO<sub>2<\/sub>); however, experimental evidence indicates that the simulated increase is much too large, leading to modelled <em>J<\/em><sub>max<\/sub> increasing with eCO<sub>2<\/sub> while observed <em>J<\/em><sub>max<\/sub> generally decreases (along with <em>V<\/em><sub>cmax<\/sub>). These last two issues are probably linked, and have required us to re-examine the optimality criterion applied to <em>J<\/em><sub>max<\/sub>.<\/p>\n<p>The analysis published here suggests it is feasible to predict GPP using a single model structure, common across vegetation categories.\u00a0 The need for a better understanding of the key drivers is echoed in a recent paper by He et al (2022) arguing in part for a move away from reliance on PFT-averaged coefficients to climate-environment relationships.\u00a0 But the goal of a model design that is at once simple, theoretically well-founded and robust continues to generate scientific challenges.<\/p>\n<h3>You can read the full paper here:<\/h3>\n<p>Bloomfield, K.J., Stocker, B.D., Keenan, T.F. and Prentice, I.C. 2022. Environmental controls on the light use efficiency of terrestrial gross primary production. Global Change Biology, <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/full\/10.1111\/gcb.16511\" target=\"_blank\" rel=\"noopener\">doi.org\/10.1111\/gcb.16511<\/a><\/p>\n<h3><strong>Dr Keith Bloomfield <\/strong><\/h3>\n<p>Keith is a member of the <a href=\"https:\/\/prenticeclimategroup.wordpress.com\/\" target=\"_blank\" rel=\"noopener\">LabPrentice REALM Team<\/a> at Imperial College London. He is interested in plant eco-physiology and the genetic and environmental sources of variation in leaf traits linked to photosynthesis, respiration and longevity. Within the REALM project, he is focused on providing statistical and graphical analyses to help interpret the model output.<\/p>\n<p>This research was funded by LEMONTREE (funded through the generosity of Eric and Wendy Schmidt by recommendation of the Schmidt Futures program), the European Research Council (ERC) under the European Union&#8217;s Horizon 2020 research and innovation programme (Grant No: 787203 REALM), the Swiss National Science Foundation (grant PCEFP2_181115), the NASA Carbon Cycle Science (Award 80NSSC21K1705), and the RUBISCO SFA, which is sponsored by the Regional and Global Model Analysis (RGMA) Program in the Climate and Environmental Sciences Division (CESD) of the Office of Biological and Environmental Research (BER) in the U.S. Department of Energy (DOE) Office of Science.<\/p>\n<h3><strong>References<\/strong><\/h3>\n<p>Farquhar, G. D., von Caemmerer, S., &amp; Berry, J. A. (1980). A biochemical model of photosynthetic CO<sub>2<\/sub>\u00a0 assimilation in leaves of C<sub>3<\/sub> species. <em>Planta<\/em>,<em> 149<\/em>, 78-90.<\/p>\n<p>He, M. Z., Chen, S. Y., Lian, X., Wang, X. H., Penuelas, J., &amp; Piao, S. L. (2022). Global Spectrum of Vegetation Light-Use Efficiency. <em>Geophysical Research Letters<\/em>,<em> 49<\/em>(16), Article e2022GL099550. <a href=\"https:\/\/doi.org\/10.1029\/2022gl099550\" target=\"_blank\" rel=\"noopener\">https:\/\/doi.org\/10.1029\/2022gl099550<\/a><\/p>\n<p>Schaefer, K., Schwalm, C. R., Williams, C., Arain, M. A., Barr, A., Chen, J. M., Davis, K. J., Dimitrov, D., Hilton, T. W., Hollinger, D. Y., Humphreys, E., Poulter, B., Raczka, B. M., Richardson, A. D., Sahoo, A., Thornton, P., Vargas, R., Verbeeck, H., Anderson, R., . . . Zhou, X. L. (2012). A model-data comparison of gross primary productivity: Results from the North American Carbon Program site synthesis. <em>Journal of Geophysical Research-Biogeosciences<\/em>,<em> 117<\/em>, Article G03010. <a href=\"https:\/\/doi.org\/10.1029\/2012jg001960\" target=\"_blank\" rel=\"noopener\">https:\/\/doi.org\/10.1029\/2012jg001960<\/a><\/p>\n<p>Wang, H., Prentice, I. C., Keenan, T. F., Davis, T. W., Wright, I. J., Cornwell, W. K., Evans, B. J., &amp; Peng, C. H. (2017). Towards a universal model for carbon dioxide uptake by plants. <em>Nature Plants<\/em>,<em> 3<\/em>(9), 734-741. <a href=\"https:\/\/doi.org\/10.1038\/s41477-017-0006-8\" target=\"_blank\" rel=\"noopener\">https:\/\/doi.org\/10.1038\/s41477-017-0006-8<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>By Dr Keith Bloomfield A general formula for photosynthesis is enticingly simple: take a green plant, add carbon dioxide, water, a handful of nutrients (dominated by forms of nitrogen and&#8230;<a class=\"read-more\" href=\"&#104;&#116;&#116;&#112;&#115;&#58;&#47;&#47;&#114;&#101;&#115;&#101;&#97;&#114;&#99;&#104;&#46;&#114;&#101;&#97;&#100;&#105;&#110;&#103;&#46;&#97;&#99;&#46;&#117;&#107;&#47;&#108;&#101;&#109;&#111;&#110;&#116;&#114;&#101;&#101;&#47;&#97;&#45;&#114;&#101;&#99;&#101;&#110;&#116;&#45;&#112;&#97;&#112;&#101;&#114;&#45;&#108;&#101;&#100;&#45;&#98;&#121;&#45;&#114;&#101;&#97;&#108;&#109;&#115;&#45;&#100;&#114;&#45;&#107;&#101;&#105;&#116;&#104;&#45;&#98;&#108;&#111;&#111;&#109;&#102;&#105;&#101;&#108;&#100;&#45;&#100;&#105;&#115;&#99;&#117;&#115;&#115;&#101;&#115;&#45;&#116;&#104;&#101;&#45;&#101;&#110;&#118;&#105;&#114;&#111;&#110;&#109;&#101;&#110;&#116;&#97;&#108;&#45;&#99;&#111;&#110;&#116;&#114;&#111;&#108;&#115;&#45;&#111;&#102;&#45;&#108;&#105;&#103;&#104;&#116;&#45;&#117;&#115;&#101;&#45;&#101;&#102;&#102;&#105;&#99;&#105;&#101;&#110;&#99;&#121;&#45;&#111;&#102;&#45;&#103;&#112;&#112;&#47;\">Read More ><\/a><\/p>\n","protected":false},"author":682,"featured_media":1630,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"__cvm_playback_settings":[],"__cvm_video_id":"","footnotes":""},"categories":[12],"tags":[],"coauthors":[33],"class_list":["post-1629","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-blogs"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.8.1 - 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