{"id":2710,"date":"2025-05-14T09:58:32","date_gmt":"2025-05-14T08:58:32","guid":{"rendered":"https:\/\/research.reading.ac.uk\/met-darc\/?p=2710"},"modified":"2025-05-14T10:08:40","modified_gmt":"2025-05-14T09:08:40","slug":"tccas-the-terrestrial-carbon-cycle-assimilation-system","status":"publish","type":"post","link":"https:\/\/research.reading.ac.uk\/met-darc\/2025\/05\/14\/tccas-the-terrestrial-carbon-cycle-assimilation-system\/","title":{"rendered":"TCCAS: The Terrestrial Carbon Cycle Assimilation System"},"content":{"rendered":"<p>by Tristan Quaife, May 2025<\/p>\n<p>Implementing a Data Assimilation system for a model can be an arduous task, often involving a substantial amount of reprogramming. A better option, where possible, is to build Data Assimilation into the design of a model from the outset. The Terrestrial Carbon Community Assimilation System, or TCCAS, has been designed with exactly that in mind.<\/p>\n<p>TCCAS contains two existing models: DALEC and BETHY. \u00a0These models handle different aspects of land surface processes related to the carbon cycle, and combined they form a single model called D&amp;B. Both models have significant pedigree in terrestrial carbon cycle science and are used in a wide range of applications. Figure 1. illustrates some of the processes that are included in the combined D&amp;B model.<\/p>\n<figure id=\"attachment_2711\" aria-describedby=\"caption-attachment-2711\" style=\"width: 451px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-2711\" src=\"https:\/\/research.reading.ac.uk\/met-darc\/wp-content\/uploads\/sites\/48\/2025\/05\/TCCAS.png\" alt=\"\" width=\"451\" height=\"306\" srcset=\"https:\/\/research.reading.ac.uk\/met-darc\/wp-content\/uploads\/sites\/48\/2025\/05\/TCCAS.png 451w, https:\/\/research.reading.ac.uk\/met-darc\/wp-content\/uploads\/sites\/48\/2025\/05\/TCCAS-300x204.png 300w\" sizes=\"auto, (max-width: 451px) 100vw, 451px\" \/><figcaption id=\"caption-attachment-2711\" class=\"wp-caption-text\">Figure 1. Schematic of the flows of carbon and water in the DALEC-BETHY model. Solid green arrows are flows of carbon and solid blue arrows are flow of water. Taken from Knorr et al. 2025.<\/figcaption><\/figure>\n<h4><strong>Data Assimilation<\/strong><\/h4>\n<p>The TCASS computer code is wrapped in a data assimilation system that can take in a variety of data types. The data assimilation wrapper can also adjust the parameters of the D&amp;B model to provide the best match between the model outputs and the observed data (e.g., the flux of carbon between the land and the atmosphere), The Data Assimilation routines require differentiated versions of the model code so, as new parts of the model are added, all necessary tools \u00a0for differentiation are included at the same time. This means that Data Assimilation is always available for the latest model version.<\/p>\n<p>The development of TCCAS was funded by the European Space Agency, under several projects, with the goal of allowing it to exploit a range of different satellite data. To that end, TCCAS contains observation operators (see my previous <a href=\"https:\/\/research.reading.ac.uk\/met-darc\/2024\/03\/21\/are-satellite-observations-really-measuring-the-same-thing-as-your-model-predicts-probably-not-heres-what-to-do-about-it\/\">blog post<\/a>) that represent low-level observations from various satellites, including <a href=\"https:\/\/encyclopedia.pub\/entry\/2766\">vegetation optical depth<\/a> and <a href=\"https:\/\/eo4society.esa.int\/projects\/sentinel-5p-innovation-solar-induced-chlorophyll-fluorescence-sif\/\">solar induced fluorescence<\/a>. Future developments will address observations from some satellites that have yet to be launched, such as FLEX. <a href=\"https:\/\/earth.esa.int\/eogateway\/missions\/flex\">FLEX<\/a> will be the first dedicated satellite mission to observe solar induced fluorescence from plants and will provide important information about how much carbon they are taking up.<\/p>\n<h4><strong>Applications for TCCAS<\/strong><\/h4>\n<p>TCCAS is ideally suited to assessing carbon budgets on regional to global scales. Given sufficient data to constrain it, it can predict how much carbon is being taken up by terrestrial vegetation, such as forests. Therefore, using TCCAS we can predict how much carbon will be absorbed under different land management regimes, for example afforestation.<\/p>\n<p>TCCAS can also be used at the site scale to examine ecosystem level process in detail. This has been done for a handful of experimental forest sites where large amounts of data are routinely collected. Where such data exists, D&amp;B can \u00a0help to understand questions such as \u2018how have droughts affected the carbon balance of a forest?\u2019 or \u2018how do cold temperatures affect photosynthesis?&#8217;.<\/p>\n<p>TCCAS can also be used for something known as observing system simulation experiments (or \u201cOSSEs\u201d). For example, if a new satellite was proposed to study the carbon cycle, TCCAS can be used to assess the impact of the new satellite observations in terms of the model\u2019s ability to constrain carbon sequestration rates. It\u2019s also possible to examine \u201cwhat if\u201d scenarios such as the impact of clouds or a change in satellite orbit on the model predictions.<\/p>\n<h4><strong>Can anyone use it?<\/strong><\/h4>\n<p>In short, yes! TCCAS is freely available for download. Sample datasets used to run the model and perform assimilation experiments are also included. There is an extensive user manual which is being continually updated. The manual includes instructions on how to install the software and how to run some pre-configured examples. There are also occasional training events to help get people started using the software.<\/p>\n<h4><strong>Where can I find out more?<\/strong><\/h4>\n<p>More information is available on the TCCAS web page: <a href=\"https:\/\/tccas.inversion-lab.com\/\">https:\/\/tccas.inversion-lab.com\/<\/a><\/p>\n<p>A recent peer reviewed scientific paper describes the D&amp;B model in detail: Knorr, Wolfgang, et al. &#8220;A comprehensive land-surface vegetation model for multi-stream data assimilation, D&amp;B v1. 0.&#8221;\u00a0<em>Geoscientific Model Development<\/em> 18.7 (2025): 2137-2159.\u00a0<a href=\"https:\/\/gmd.copernicus.org\/articles\/18\/2137\/2025\/\">https:\/\/gmd.copernicus.org\/articles\/18\/2137\/2025\/<\/a><\/p>\n<p>And another paper describing the data assimilation system will be published in due course.<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>by Tristan Quaife, May 2025 Implementing a Data Assimilation system for a model can be an arduous task, often involving a substantial amount of reprogramming. A better option, where possible,&#8230;<a class=\"read-more\" href=\"&#104;&#116;&#116;&#112;&#115;&#58;&#47;&#47;&#114;&#101;&#115;&#101;&#97;&#114;&#99;&#104;&#46;&#114;&#101;&#97;&#100;&#105;&#110;&#103;&#46;&#97;&#99;&#46;&#117;&#107;&#47;&#109;&#101;&#116;&#45;&#100;&#97;&#114;&#99;&#47;&#50;&#48;&#50;&#53;&#47;&#48;&#53;&#47;&#49;&#52;&#47;&#116;&#99;&#99;&#97;&#115;&#45;&#116;&#104;&#101;&#45;&#116;&#101;&#114;&#114;&#101;&#115;&#116;&#114;&#105;&#97;&#108;&#45;&#99;&#97;&#114;&#98;&#111;&#110;&#45;&#99;&#121;&#99;&#108;&#101;&#45;&#97;&#115;&#115;&#105;&#109;&#105;&#108;&#97;&#116;&#105;&#111;&#110;&#45;&#115;&#121;&#115;&#116;&#101;&#109;&#47;\">Read More ><\/a><\/p>\n","protected":false},"author":931,"featured_media":2717,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"__cvm_playback_settings":[],"__cvm_video_id":"","footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[62,61,14,25],"class_list":["post-2710","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorised","tag-carbon-cycle","tag-land-surface-models","tag-satellite-data","tag-solar-induced-fluorescence"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.8.1 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>TCCAS: The Terrestrial Carbon Cycle Assimilation System - DARC<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/research.reading.ac.uk\/met-darc\/2025\/05\/14\/tccas-the-terrestrial-carbon-cycle-assimilation-system\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"TCCAS: The Terrestrial Carbon Cycle Assimilation System - DARC\" \/>\n<meta property=\"og:description\" content=\"by Tristan Quaife, May 2025 Implementing a Data Assimilation system for a model can be an arduous task, often involving a substantial amount of reprogramming. 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